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265788
Alineamiento de secuencias
Description
Mind Map on Alineamiento de secuencias, created by annie_mv on 10/10/2013.
Mind Map by
annie_mv
, updated more than 1 year ago
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Created by
annie_mv
almost 11 years ago
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Resource summary
Alineamiento de secuencias
Alineamientos múltiples
Clustal W: Para propósitos en general de alineamientos múltiples ya sea DNA o proteínas
COBALT: constraint-based alignment tool para alineamientos de proteínas
Clustal X: windows interface for the ClustalW multiple sequence alignment program.
T-Coffe: Alinea RNA, DNAo proteínas
MUSCLE: Especial para proteínas y alineamientos medios
Alineamientos locales
Blastn:Más comúnmente usado para comparar secuencias nucleotídicas contra una base de datos
Blastp: Blas con gaps, compara secuencias aminoacídicas y usa matrizes BLOSUM o PAM
Blast2seq: Alineamiento local de dos secuencias
Alineamiento global
Emboss Needle: Para 2 secuencias utillizando el algoritmo Needleman-Wunsch
Emboss Stetcher: Versión mejorada del algoritmo N-W.Permite alinear secuencias más largas
Emboss Matcher: Identifica similitudes locales de 2 seq usando LALIGN
Emboss Water: Usa el algoritmo Smith-Waterman para realizar alineamiento local de 2 seq
Needleman-Wunsch: Algoritmo para alineamientos globales
Programas
BioEdit: Easy-to-use sequence alignment editor and sequence analysis program
MEGA:alineamientois múltiples, locales, árboles filogenéticos, etc
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