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BLAST

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Year 2 Flashcards on BLAST, created by gina_evans0312 on 28/12/2013.
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Flashcards by gina_evans0312, updated more than 1 year ago
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Created by gina_evans0312 almost 11 years ago
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Question Answer
BLAST Uses 'words' instead of singly aa/bp to compare sequences
BLAST N Uses nucleotides
BLAST P Protein Sequences
PSIBLAST Position Specific Iterated Blast- useful for different homologues
BLASTX Six frame translations of a nucleotide sequence- useful when reading frame is unknown
TBLASTN Six frame translations of a protein sequence
TBLASTX Takes nucleotide sequence, converts it into all 6 frames and compares them to 6 frame shifted sequences
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